This week I discovered graph-tool, a Python library for network analysis and visualization that is implemented in C++ with Boost. As a result, it can quickly and efficiently perform manipulations, statistical analyses of Graphs, and draw them in a visual pleasing style. It’s like using Python with the performance of C++, and I was rightly excited: It's a bear to get setup, but once you do things get pretty nice. Moving my network viz over to it now! ...

Natural Language Processing with NLTK and Gensim Description Natural Language Processing (NLP) is often taught at the academic level from the perspective of computational linguists. However, as data scientists, we have a richer view of the natural language world - unstructured data that by its very nature has latent information that is important to humans. NLP practitioners have benefited from machine learning techniques to unlock meaning from large corpora, and in this class we’ll explore how to do that particularly with Python, Gensim, and the Natural Language Toolkit (NLTK). ...

This post is an early draft of expanded work that will eventually appear on the District Data Labs Blog. Your feedback is welcome, and you can submit your comments on the draft GitHub issue. I’ve often been asked which is better for text processing, NLTK or Scikit-Learn (and sometimes Gensim). The answer is that I use all three tools on a regular basis, but I often have a problem mixing and matching them or combining them in meaningful ways. In this post, I want to show how I use NLTK for preprocessing and tokenization, but then apply machine learning techniques (e.g. building a linear SVM using stochastic gradient descent) using Scikit-Learn. In a follow on post, I’ll talk about vectorizing text with word2vec for machine learning in Scikit-Learn. ...

Yesterday I built my first microservice (a RESTful API) using Go, and I wanted to collect a few of my thoughts on the experience here before I forgot them. The project, Scribo, is intended to aid in my research by collecting data about a specific network that I’m looking to build distributed systems for. I do have something running, which will need to evolve a lot, and it could be helpful to know where it started. ...

One of the first steps to performing analysis of Git repositories is extracting the changes over time, e.g. the Git log. This seems like it should be a very simple thing to do, as visualizations on GitHub and elsewhere show file change analyses through history on a commit by commit basis. Moreover, by using the GitPython library you have direct access to Git repositories that is scriptable. Unfortunately, things aren’t as simple as that, so I present a snippet for extracting change information from a Repository. ...

As I’ve dug into my distributed systems research, one question keeps coming up: “How do you visualize distributed systems?” Distributed systems are hard, so it feels like being able to visualize the data flow would go a long way to understanding them in detail and avoiding bugs. Unfortunately, the same things that make architecting distributed systems difficult also make them hard to visualize. I don’t have an answer to this question, unfortunately. However, in this post I’d like to state my requirements and highlight some visualizations that I think are important. Hopefully this will be the start of a more complete investigation or at least allow others to comment on what they’re doing and whether or not visualization is important. ...

One large issue that I encounter in development with machine learning is the need to structure our data on disk in a way that we can load into Scikit-Learn in a repeatable fashion for continued analysis. My proposal is to use the sklearn.datasets.base.Bunch object to load the data into data and target attributes respectively, similar to how Scikit-Learn’s toy datasets are structured. Using this object to manage our data will mirror the native API and allow us to easily copy and paste code that demonstrates classifiers and techniques with the built in datasets. Importantly, this API will also allow us to communicate to other developers and our future-selves exactly how to use the data. ...